Industries / Ecommerce

Microsoft Dynamics 365 for Ecommerce

Finsys Apps connects your online store to your back office with Microsoft Dynamics 365 — giving ecommerce businesses a single platform for inventory, orders, fulfilment, finance, and customer data, so you can scale without the chaos.

The Ecommerce Industry Challenge

Ecommerce businesses grow fast — and the systems that worked at £1m turnover break down at £5m. Orders flood in from multiple channels: your own website, Amazon, eBay, Shopify. Stock needs to be accurate across all of them simultaneously. Customers expect next-day delivery, instant updates, and effortless returns. And your finance team is drowning in spreadsheets, trying to reconcile it all at month end.

The root cause is almost always the same: disconnected systems. A separate platform for each channel, a standalone accounting package, and a warehouse that runs on gut feel and clipboards. As volumes grow, the cracks become crises — overselling, stock write-offs, margin erosion, and customer complaints that damage your reputation faster than your marketing can build it.

One platform for every channel, every order, every customer

person holding credit card in front of laptopMicrosoft Dynamics 365, and in particular Dynamics 365 Business Central, is purpose-built for this challenge. It connects your sales channels, inventory, warehouse, finance, and customer data into a single real-time system — so every part of your business is working from the same accurate picture.

Finsys Apps configures and implements Dynamics 365 for ecommerce businesses across the UK and Europe. Whether you sell direct-to-consumer, B2B, or across a mix of marketplaces and your own store, we build the system around how your business actually operates — and how you plan to grow.

Real-Time

Inventory Sync

Stock levels updated across every channel the moment an order is placed.

Seamless

Platform Integrations

Connect Shopify, Amazon, eBay, WooCommerce and more — without the manual work.

24/7

Post-Go-Live Support

Follow-the-sun support — your team is never left without expert help.

Inventory & Stock Management

Overselling is one of the most damaging things that can happen to an ecommerce brand. A customer places an order, you take their money, and then you have to tell them the item is out of stock. Dynamics 365 eliminates this by maintaining a single, real-time inventory record that updates automatically every time an order is placed — across every channel, simultaneously.

AI-powered demand forecasting helps you stay ahead of peaks — whether that’s Black Friday, a seasonal spike, or a viral product moment — so you always have the right stock in the right place at the right time, without tying up cash in slow-moving lines.

  • Real-time stock synchronisation across all sales channels and warehouses
  • AI-powered demand forecasting to plan for peaks and prevent stockouts
  • Automated reorder points and purchase order generation
  • Bin-level warehouse management for fast, accurate pick and pack
  • Batch and serial number tracking for products that require traceability

Multichannel Sales & Platform Integrations

Selling across multiple platforms is a strength — until your systems can’t keep up. Dynamics 365 integrates natively with the UK’s most widely used ecommerce platforms, pulling orders, customer data, and payment information directly into your ERP the moment a transaction occurs. No manual imports, no overnight batch files, no reconciliation headaches.

Whether you are selling on Shopify, through Amazon Seller Central, on eBay, or via your own WooCommerce or Magento store, every order flows into a single system — giving your operations team one place to manage fulfilment, and your finance team one source of truth for revenue.

  • Native integrations with Shopify, WooCommerce, Magento, and Sana Commerce
  • Amazon and eBay marketplace connections for automatic order import
  • Real-time stock availability pushed to your storefront to prevent overselling
  • Automated order routing to the correct warehouse or fulfilment partner
  • Customer and order data unified across all channels in a single CRM view
delivery van full of boxes of Amazon parcels

Order Fulfilment & Returns

Speed and accuracy in fulfilment is what separates the ecommerce businesses that win repeat customers from those that live and die by acquisition spend. Dynamics 365 automates the entire fulfilment workflow — from order receipt through pick, pack, despatch, and carrier handover — reducing the manual steps that slow you down and cause errors.

Returns are handled just as smoothly. A structured returns management process keeps your stock accurate, your refunds timely, and your customers informed — protecting your reviews and repeat purchase rate even when things go wrong.

  • Automated pick, pack, and despatch workflows triggered on order receipt
  • Carrier integrations for label generation and shipment tracking
  • Automated despatch confirmations and tracking updates to customers
  • Structured returns management with automatic stock reinstatement
  • 3PL and fulfilment partner management for outsourced operations

Financial Control & Reporting

Ecommerce profitability is notoriously difficult to measure accurately. Platform fees, fulfilment costs, returns provisions, and payment processing charges all eat into your margin — but most accounting systems can’t break this down at the product, channel, or order level. Dynamics 365 connects your operational data directly to your financial ledger, so your accounts reflect reality in real time.

Manage VAT across multiple jurisdictions, handle multi-currency transactions, automate reconciliation from your payment gateways, and produce management accounts without the month-end scramble. Power BI gives you the dashboards to understand your true profitability by product, channel, and customer segment.

  • Real-time P&L by channel, product line, and customer segment
  • Automated reconciliation from Shopify, Stripe, PayPal, and other gateways
  • Multi-currency and multi-jurisdiction VAT management
  • Returns and refund accounting handled automatically
  • Power BI dashboards for margin, channel performance, and customer LTV
Woman looking at a spreadsheet on her laptop

Why Ecommerce Businesses Choose Finsys Apps

We work with ecommerce businesses that have outgrown their starter systems and need a platform that can scale with them — without losing the agility that made them successful in the first place. We understand the operational demands of high-volume order processing, the complexity of multichannel selling, and the importance of margin visibility in a sector where costs can erode profit quickly.

We combine that ecommerce knowledge with deep Microsoft Dynamics 365 expertise, building implementations that are practical, fast to deliver, and designed to grow with your business long after go-live.

  • Deep ecommerce and multichannel retail knowledge — not a generic ERP approach
  • Microsoft-certified consultants across Dynamics 365 and Power Platform
  • Fixed-price implementations with clear milestones and no hidden costs
  • 24/7 post-go-live support as standard across all clients
  • 45+ businesses transformed across the UK and Europe

“I started Finsys Apps because I believed businesses deserved better — better implementations, better support, and better outcomes from their technology investment. Every client we work with gets my personal commitment to that standard.”

Matt Cooke

Founder & CEO, Finsys Apps

Frequently Asked Questions

Yes — Dynamics 365 Business Central has a native, Microsoft-built Shopify connector that synchronises products, inventory, orders, customers, and payments in real time. It is one of the most reliable and deeply integrated connections available, and it requires no third-party middleware. We configure and test this integration as part of every ecommerce implementation.
Yes. While Amazon and eBay connections use integration middleware rather than a native connector, there are well-established solutions — including ChannelAdvisor and similar tools — that connect Business Central to your marketplace accounts. Orders flow in automatically, inventory updates flow back out, and your ERP remains the single source of truth across all channels.
Absolutely. Business Central supports multi-currency transactions, automatic exchange rate updates, and multi-jurisdiction VAT including UK VAT, EU VAT (including OSS), and sales tax for international markets. For businesses selling into the EU post-Brexit, we configure the system to handle the relevant VAT and customs documentation requirements accurately.
Business Central is a cloud-hosted platform that scales elastically — it does not slow down or fall over during peak trading periods the way on-premise or legacy systems can. The automated workflows we configure mean your team can process significantly higher order volumes without adding headcount, because the system handles the routine steps automatically.
A typical ecommerce implementation takes between 8 and 16 weeks, depending on the number of sales channels, integrations, and the volume of historical data to migrate. We scope every project individually and provide a fixed-price proposal with clear milestones — so you know exactly what you are getting and when, before we start.

Let’s Make Things Happen

Take the first step to streamlining your business processes by getting in touch today.

“Matt and his team at Finsys Apps were fabulous. They took us through the implementation of Microsoft Dynamics Business Central, helping us design our new BI financial reporting structure, migrate our legacy data and developed new integrations.  The whole process was painless”.

David Drummond

Finance Director, Stott and May